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The ISME Journal

Volume 12, Issue 5

In this issue
Review Article
Brief Communications
Also new


Saving seed microbiomes

Gabriele Berg & Jos M. Raaijmakers

The ISME Journal 2018 12 :1167 - 1170; January 15, 2018; 10.1038/s41396-017-0028-2


Abstract | Full Text

Review Article

Phage or foe: an insight into the impact of viral predation on microbial communities

Lucía Fernández, Ana Rodríguez & Pilar García

The ISME Journal 2018 12 :1171 - 1179; January 25, 2018; 10.1038/s41396-018-0049-5


Abstract | Full Text


Carbon limitation drives GC content evolution of a marine bacterium in an individual-based genome-scale model

Ferdi L Hellweger, Yongjie Huang & Haiwei Luo

The ISME Journal 2018 12 :1180 - 1187; January 12, 2018; 10.1038/s41396-017-0023-7


Abstract | Full Text

The stage of soil development modulates rhizosphere effect along a High Arctic desert chronosequence

Francesca Mapelli, Ramona Marasco, Marco Fusi, Barbara Scaglia, George Tsiamis et al.

The ISME Journal 2018 12 :1188 - 1198; January 15, 2018; 10.1038/s41396-017-0026-4


Abstract | Full Text

The emergence of metabolic heterogeneity and diverse growth responses in isogenic bacterial cells

Emrah Şimşek & Minsu Kim

The ISME Journal 2018 12 :1199 - 1209; January 15, 2018; 10.1038/s41396-017-0036-2


Abstract | Full Text

Oral microbiota of periodontal health and disease and their changes after nonsurgical periodontal therapy

Casey Chen, Chris Hemme, Joan Beleno, Zhou Jason Shi, Daliang Ning et al.

The ISME Journal 2018 12 :1210 - 1224; January 16, 2018; 10.1038/s41396-017-0037-1


Abstract | Full Text

Novel hydrogenases from deep-sea hydrothermal vent metagenomes identified by a recently developed activity-based screen

Nicole Adam & Mirjam Perner

The ISME Journal 2018 12 :1225 - 1236; January 17, 2018; 10.1038/s41396-017-0040-6


Abstract | Full Text

Identifying metabolic pathways for production of extracellular polymeric substances by the diatom Fragilariopsis cylindrus inhabiting sea ice

Shazia N. Aslam, Jan Strauss, David N. Thomas, Thomas Mock & Graham J. C. Underwood

The ISME Journal 2018 12 :1237 - 1251; January 18, 2018; 10.1038/s41396-017-0039-z


Abstract | Full Text

Calling from distance: attraction of soil bacteria by plant root volatiles

Kristin Schulz-Bohm, Saskia Gerards, Maria Hundscheid, Jasper Melenhorst, Wietse de Boer et al.

The ISME Journal 2018 12 :1252 - 1262; January 22, 2018; 10.1038/s41396-017-0035-3


Abstract | Full Text

Quorum-sensing control of antibiotic resistance stabilizes cooperation in Chromobacterium violaceum

Kara C Evans, Saida Benomar, Lennel A Camuy-Vélez, Ellen B Nasseri, Xiaofei Wang et al.

The ISME Journal 2018 12 :1263 - 1272; January 26, 2018; 10.1038/s41396-018-0047-7


Abstract | Full Text

Energy limitation of cyanophage development: implications for marine carbon cycling

Richard J. Puxty, David J. Evans, Andrew D. Millard & David J. Scanlan

The ISME Journal 2018 12 :1273 - 1286; January 29, 2018; 10.1038/s41396-017-0043-3


Abstract | Full Text

Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan

Takashi Yoshida, Yosuke Nishimura, Hiroyasu Watai, Nana Haruki, Daichi Morimoto et al.

The ISME Journal 2018 12 :1287 - 1295; January 30, 2018; 10.1038/s41396-018-0052-x


Abstract | Full Text

Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota

Nanna B Svenningsen, Stephanie J Watts-Williams, Erik J Joner, Fabio Battini, Aikaterini Efthymiou et al.

The ISME Journal 2018 12 :1296 - 1307; January 30, 2018; 10.1038/s41396-018-0059-3


Abstract | Full Text

Single-cell measurement of ammonium and bicarbonate uptake within a photosymbiotic bioeroding sponge

Michelle Achlatis, Mathieu Pernice, Kathryn Green, Paul Guagliardo, Matthew R Kilburn et al.

The ISME Journal 2018 12 :1308 - 1318; January 31, 2018; 10.1038/s41396-017-0044-2


Abstract | Full Text

Age-associated microbiome shows the giant panda lives on hemicelluloses, not on cellulose

Wenping Zhang, Wenbin Liu, Rong Hou, Liang Zhang, Stephan Schmitz-Esser et al.

The ISME Journal 2018 12 :1319 - 1328; February 01, 2018; 10.1038/s41396-018-0051-y


Abstract | Full Text

Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia

Yohei Kumagai, Susumu Yoshizawa, Yu Nakajima, Mai Watanabe, Tsukasa Fukunaga et al.

The ISME Journal 2018 12 :1329 - 1343; February 06, 2018; 10.1038/s41396-018-0058-4


Abstract | Full Text

Phylogenetic clustering of small low nucleic acid-content bacteria across diverse freshwater ecosystems

Caitlin R. Proctor, Michael D. Besmer, Timon Langenegger, Karin Beck, Jean-Claude Walser et al.

The ISME Journal 2018 12 :1344 - 1359; February 07, 2018; 10.1038/s41396-018-0070-8


Abstract | Full Text

Small eukaryotic phytoplankton communities in tropical waters off Brazil are dominated by symbioses between Haptophyta and nitrogen-fixing cyanobacteria

Catherine Gérikas Ribeiro, Adriana Lopes dos Santos, Dominique Marie, Frederico Pereira Brandini & Daniel Vaulot

The ISME Journal 2018 12 :1360 - 1374; February 09, 2018; 10.1038/s41396-018-0050-z


Abstract | Full Text

Microbiome assembly of avian eggshells and their potential as transgenerational carriers of maternal microbiota

H. Pieter J. van Veelen, Joana Falcão Salles & B. Irene Tieleman

The ISME Journal 2018 12 :1375 - 1388; February 14, 2018; 10.1038/s41396-018-0067-3


Abstract | Full Text

Brief Communications

Biological rejuvenation of iron oxides in bioturbated marine sediments

Jacob P. Beam, Jarrod J. Scott, Sean M. McAllister, Clara S. Chan, James McManus et al.

The ISME Journal 2018 12 :1389 - 1394; January 17, 2018; 10.1038/s41396-017-0032-6


Abstract | Full Text

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