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The ISME Journal

Volume 12, Issue 8

In this issue
Brief Communications
Also new


Population genomic analysis of the rice blast fungus reveals specific events associated with expansion of three main clades

Zhenhui Zhong, Meilian Chen, Lianyu Lin, Yijuan Han, Jiandong Bao et al.

The ISME Journal 2018 12 :1867 - 1878; March 22, 2018; 10.1038/s41396-018-0100-6


Abstract | Full Text

Demographic fluctuation of community-acquired antibiotic-resistant Staphylococcus aureus lineages: potential role of flimsy antibiotic exposure

Claude-Alexandre Gustave, Anne Tristan, Patricia Martins-Simões, Marc Stegger, Yvonne Benito et al.

The ISME Journal 2018 12 :1879 - 1894; March 29, 2018; 10.1038/s41396-018-0110-4


Abstract | Full Text

Thermophilic endospores associated with migrated thermogenic hydrocarbons in deep Gulf of Mexico marine sediments

Anirban Chakraborty, Emily Ellefson, Carmen Li, Daniel Gittins, James M. Brooks et al.

The ISME Journal 2018 12 :1895 - 1906; March 29, 2018; 10.1038/s41396-018-0108-y


Abstract | Full Text

Short-term dynamics and interactions of marine protist communities during the spring–summer transition

Lyria Berdjeb, Alma Parada, David M. Needham & Jed A. Fuhrman

The ISME Journal 2018 12 :1907 - 1917; March 29, 2018; 10.1038/s41396-018-0097-x


Abstract | Full Text

The ecology and diversity of microbial eukaryotes in geothermal springs

Angela M. Oliverio, Jean F. Power, Alex Washburne, S. Craig Cary, Matthew B. Stott et al.

The ISME Journal 2018 12 :1918 - 1928; April 16, 2018; 10.1038/s41396-018-0104-2


Abstract | Full Text

A methanotrophic archaeon couples anaerobic oxidation of methane to Fe(III) reduction

Chen Cai, Andy O Leu, Guo-Jun Xie, Jianhua Guo, Yuexing Feng et al.

The ISME Journal 2018 12 :1929 - 1939; April 16, 2018; 10.1038/s41396-018-0109-x


Abstract | Full Text

Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm

Wenzheng Liu, Jakob Russel, Mette Burmølle, Søren J. Sørensen & Jonas S. Madsen

The ISME Journal 2018 12 :1940 - 1951; April 18, 2018; 10.1038/s41396-018-0112-2


Abstract | Full Text

Cascading effects on bacterial communities: cattle grazing causes a shift in the microbiome of a herbivorous caterpillar

Tali S. Berman, Sivan Laviad-Shitrit, Maya Lalzar, Malka Halpern & Moshe Inbar

The ISME Journal 2018 12 :1952 - 1963; April 25, 2018; 10.1038/s41396-018-0102-4


Abstract | Full Text

Interplay between gut microbiota metabolism and inflammation in HIV infection

Jorge F. Vázquez-Castellanos, Sergio Serrano-Villar, Nuria Jiménez-Hernández, María Dolores Soto del Rio, Sara Gayo et al.

The ISME Journal 2018 12 :1964 - 1976; May 23, 2018; 10.1038/s41396-018-0151-8


Abstract | Full Text

Burkholderia bacteria use chemotaxis to find social amoeba Dictyostelium discoideum hosts

Longfei Shu, Bojie Zhang, David C. Queller & Joan E. Strassmann

The ISME Journal 2018 12 :1977 - 1993; May 24, 2018; 10.1038/s41396-018-0147-4


Abstract | Full Text

Horizontal operon transfer, plasmids, and the evolution of photosynthesis in Rhodobacteraceae

Henner Brinkmann, Markus Göker, Michal Koblížek, Irene Wagner-Döbler & Jörn Petersen

The ISME Journal 2018 12 :1994 - 2010; May 24, 2018; 10.1038/s41396-018-0150-9


Abstract | Full Text

Species-specific transcriptomic network inference of interspecies interactions

Ryan S. McClure, Christopher C. Overall, Eric A. Hill, Hyun-Seob Song, Moiz Charania et al.

The ISME Journal 2018 12 :2011 - 2023; May 24, 2018; 10.1038/s41396-018-0145-6


Abstract | Full Text

In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana

Claudia Bartoli, Léa Frachon, Matthieu Barret, Mylène Rigal, Carine Huard-Chauveau et al.

The ISME Journal 2018 12 :2024 - 2038; May 30, 2018; 10.1038/s41396-018-0152-7


Abstract | Full Text

Fermentative Spirochaetes mediate necromass recycling in anoxic hydrocarbon-contaminated habitats

Xiyang Dong, Chris Greening, Thomas Brüls, Ralf Conrad, Kun Guo et al.

The ISME Journal 2018 12 :2039 - 2050; May 30, 2018; 10.1038/s41396-018-0148-3


Abstract | Full Text

Taxonomic diversity of fungi deposited from the atmosphere

Cheolwoon Woo, Choa An, Siyu Xu, Seung-Muk Yi & Naomichi Yamamoto

The ISME Journal 2018 12 :2051 - 2060; May 30, 2018; 10.1038/s41396-018-0160-7


Abstract | Full Text

Competitive inter-species interactions underlie the increased antimicrobial tolerance in multispecies brewery biofilms

Ilse Parijs & Hans P. Steenackers

The ISME Journal 2018 12 :2061 - 2075; June 01, 2018; 10.1038/s41396-018-0146-5


Abstract | Full Text

Temporal dynamics of microbiota before and after host death

David Preiswerk, Jean-Claude Walser & Dieter Ebert

The ISME Journal 2018 12 :2076 - 2085; June 04, 2018; 10.1038/s41396-018-0157-2


Abstract | Full Text

Brief Communications

Methanobactin from Methylosinus trichosporium OB3b inhibits N2O reduction in denitrifiers

Jin Chang, Wenyu Gu, Doyoung Park, Jeremy D. Semrau, Alan A. DiSpirito et al.

The ISME Journal 2018 12 :2086 - 2089; January 12, 2018; 10.1038/s41396-017-0022-8


Abstract | Full Text

Bdellovibrio bacteriovorus HD100, a predator of Gram-negative bacteria, benefits energetically from Staphylococcus aureus biofilms without predation

Hansol Im, Mohammed Dwidar & Robert J. Mitchell

The ISME Journal 2018 12 :2090 - 2095; May 30, 2018; 10.1038/s41396-018-0154-5


Abstract | Full Text

Beyond the tip of the iceberg; a new view of the diversity of sulfite- and sulfate-reducing microorganisms

Adrien Vigneron, Perrine Cruaud, Eric Alsop, Julia R. de Rezende, Ian M. Head et al.

The ISME Journal 2018 12 :2096 - 2099; May 28, 2018; 10.1038/s41396-018-0155-4


Abstract | Full Text

Low activity of lytic pelagiphages in coastal marine waters

Laura Alonso-Sáez, Xosé Anxelu G. Morán & Martha RJ Clokie

The ISME Journal 2018 12 :2100 - 2102; June 05, 2018; 10.1038/s41396-018-0185-y


Abstract | Full Text

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